PAL2NAL output

                               M   R   S   L   V   L   L   C   V   L   L   M   A   I   C   A   A   D   K   K
uniprot|Q25153|Q25153_HALSO    atg agg tct ttg gtg ctt ctc tgt gtt ttg ctg atg gca ata tgt gcg gcg gac aaa aaa
                               M   R   S   L   V   L   L   C   V   L   L   M   A   I   C   A   A   D   K   K
uniprot|Q25128|Q25128_HALRU    atg agg tct ttg gtg ctt ctc tgt gtt ttg ctg atg gca ata tgt gcg gcg gac aaa aaa

                               T   T   V   S   K   E   N   A   A   A   M   K   I   A   M   I   K   F   L   D
uniprot|Q25153|Q25153_HALSO    acc acg gtc tcg aag gaa aat gca gcc gca atg aag ata gct atg ata aag ttt ttg gat
                               S   T   V   S   K   E   N   A   A   A   M   K   V   A   M   I   K   F   L   D
uniprot|Q25128|Q25128_HALRU    tcc acg gtc tcg aag gaa aat gca gcc gca atg aag gta gcg atg ata aag ttt ttg gat

                               A   R   A   G   K   F   K   K   R   V   E   N   M   G   Y   P   I   T   P   P
uniprot|Q25153|Q25153_HALSO    gcg agg gcg ggt aaa ttc aaa aaa cgc gtt gag aat atg gga tat cca ata acc cct ccg
                               S   R   T   D   R   F   K   K   R   I   E   K   I   G   Y   P   I   T   P   P
uniprot|Q25128|Q25128_HALRU    tcg agg acg gat aga ttc aaa aaa cgc att gag aag att gga tat cca ata acc cct ccg

                               Q   W   T   T   L   L   Y   Y   N   R   Q   R   L   M   E   W   C   H   T   Y
uniprot|Q25153|Q25153_HALSO    caa tgg aca act cta cta tac tac aac aga cag aga ttg atg gaa tgg tgc cat acc tac
                               Q   Y   T   T   L   L   Y   Y   N   R   E   R   L   M   D   W   C   H   N   Y
uniprot|Q25128|Q25128_HALRU    caa tat aca act cta cta tac tac aac aga gag aga ttg atg gat tgg tgc cat aac tac

                               V   E   F   S   K   K   I   I   L   M   G   G   N   K   L   N   K   K   N   F
uniprot|Q25153|Q25153_HALSO    gtt gaa ttt tcc aaa aag att ata ttg atg gga ggt aac aaa tta aat aag aag aac ttc
                               V   E   V   S   K   K   I   I   L   L   G   G   N   K   L   N   K   K   N   F
uniprot|Q25128|Q25128_HALRU    gtt gaa gta tcc aaa aag att ata ttg ttg gga ggt aac aaa tta aat aag aag aac ttc

                               T   R   M   G   R   I   I   G   W   K   N   Q   W   V   L   K   R   R   Q   W
uniprot|Q25153|Q25153_HALSO    act agg atg ggt cga atc att ggc tgg aaa aac cag tgg gtt ttg aaa agg agg caa tgg
                               A   R   M   G   R   I   I   G   W   K   N   Q   W   I   L   K   R   R   Q   W
uniprot|Q25128|Q25128_HALRU    gct agg atg ggt cga atc att ggc tgg aaa aac cag tgg att ttg aaa agg agg caa tgg

                               E   M   V   R   V   M   R   R   Y   K   S   T   A   I   A   K   K   I   V   A
uniprot|Q25153|Q25153_HALSO    gag atg gtc aga gtg atg agg cgc tat aaa agt act gca ata gct aaa aag atc gtc gcc
                               H   M   V   R   V   M   R   R   Y   K   A   S   A   I   A   K   K   I   V   A
uniprot|Q25128|Q25128_HALRU    cac atg gtc aga gtg atg agg cgc tat aaa gct tct gca ata gct aaa aag atc gtc gcc

                               M   K   V   A   D   L   P   C   N
uniprot|Q25153|Q25153_HALSO    atg aaa gtt gct gac cta ccc tgt aac
                               M   K   V   A   D   L   P   C   N
uniprot|Q25128|Q25128_HALRU    atg aaa gtt gct gac cta ccc tgt aac